Dot plot may refer to:

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Yet another

Similarity Searcher, a pairwise nucleotide sequence alignment tool with dotplot YaST – Yet another Setup Tool, an operating system installation and configuration

General-purpose computing on graphics processing units

Opensource Smith–Waterman for SSE/CUDA, suffix array based repeats finder and dotplot Fast short read alignment 6–8x T 2075, 2090, K10, K20, K20X Yes Available

List of alignment visualization software

website CINEMA No, but can read-show 2D structure annotations ClustalW No Dotplot, 6 frame translation, Blast Nexus, MSF, Clustal, FASTA, PHYLIP, PIR, PRINTS

List of sequence alignment software

Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. Both Both DNASTAR 1993-2016 MUMmer suffix tree based Nucleotide

List of protein tandem repeat annotation software

filtering of redundant predictions yes DOTTER 1995 downloadable Graphical dotplot program for detailed comparison of two sequences 0J.PY PTRStalker 2012

Stemloc

the "-log DOTPLOT" command will output a visual representation of the fold and alignment envelopes. stemloc nanos-tiny.rna -fast -log DOTPLOT The main

Viral Bioinformatics Resource Center

pre-processed dotplots of the genome and gene (DNA or protein) sequences available in the VBRC database, and take user input for generation of new dotplots. JDotter