📑 Table of Contents▼
Consed
DeveloperDavid Gordon
Operating systemUNIX, Linux, Mac OS X
TypeBioinformatics
LicenseProprietary
Websitehttp://bozeman.mbt.washington.edu/consed/consed.html

Consed[1] is a program for viewing, editing, and finishing DNA sequence assemblies. Originally developed for sequence assemblies created with phrap, recent versions also support other sequence assembly programs like Newbler.

History

edit

Consed was originally developed as a contig editing and finishing tool for large-scale cosmid shotgun sequencing in the Human Genome Project. At genome sequencing centers, Consed was used to check assemblies generated by phrap, solve assembly problems like those caused by highly identical repeats, and finishing tasks like primer picking and gap closure. Development of Consed has continued after the completion of the Human Genome Project. Current Consed versions support very large projects with millions of reads, enabling the use with newer sequencing methods like 454 sequencing and Solexa sequencing. Consed also has advanced tools for finishing tasks like automated primer picking [2]

See also

edit

References

edit
  1. ^ Gordon D, Abajian C, Green P (1998). "Consed: A Graphical Tool for Sequence Finishing". Genome Research. 8 (3): 195–202. doi:10.1101/gr.8.3.195. PMID 9521923.
  2. ^ Gordon D, Desmarais C, Green P (2001). "Automated Finishing with Autofinish". Genome Research. 11 (4): 614–625. doi:10.1101/gr.171401. PMC 311035. PMID 11282977.
edit


Stub icon 1 Stub icon 2

This bioinformatics-related article is a stub. You can help Wikipedia by adding missing information.

📚 Artikel Terkait di Wikipedia

Lisp (programming language)

car and cdr functions are also called first and rest when referring to conses which are part of a linked list (rather than, say, a tree). Thus, a Lisp

Rudy Hatfield

Rudolph Conse "Rudy" Hatfield II (born September 13, 1977) is an American-Filipino former professional basketball player who played for Laguna Lakers

Phrap

widely used program for DNA sequence assembly. It is part of the Phred-Phrap-Consed package. Phrap was originally developed by Prof. Phil Green for the assembly

Concesio

Concesio (Brescian: Consés; locally Conhè) is a town and comune in the province of Brescia, in Lombardy in Trompia valley. It is located 8.2 kilometres

ACE (genomic file format)

about genomic contigs. The original ACE format was developed for use with Consed, a program for viewing, editing, and finishing DNA sequence assemblies.

Cons

pointers to two values. These objects are referred to as (cons) cells, conses, non-atomic s-expressions ("NATSes"), or (cons) pairs. In Lisp jargon, the

Regional Council of Burgundy

Regional Council of Burgundy (French: Conseil régional de Bourgogne, Arpitan: Consèly règ·ionâl de Borgogne) was the deliberative assembly administering the

Tracing garbage collection

If an appropriate traversal order is used (such as cdr-first for list conses), objects can be moved very close to the objects they refer to in memory