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SplitsTree
DevelopersDaniel Huson and David Bryant
Stable release
4.17.1 / 2021
Preview release
5.3 / 2021
Operating systemWindows, Linux, Mac OS X
TypeBioinformatics
LicenseProprietary
Websiteuni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/splitstree/
An example of a neighbor-net phylogenetic network generated by SplitsTree v4.6.

SplitsTree is a freeware program for inferring phylogenetic trees, phylogenetic networks, or, more generally, split graphs, from various types of data such as a sequence alignment, a distance matrix or a set of trees.[1][2]

Software

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SplitsTree implements published methods such as split decomposition,[3] neighbor-net, consensus networks,[4] super networks methods or methods for computing hybridization or simple recombination networks. It uses the NEXUS file format. The splits graph is defined using a special data block (SPLITS block).

See also

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References

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  1. ^ Dress, A.; K. T. Huber; V. Moulton (2001). "Metric spaces in pure and applied mathematics" (PDF). Documenta Mathematica. Documenta Mathematica Series. 2: 121–139. doi:10.4171/dms/2/5. ISBN 978-3-98547-042-6.
  2. ^ Huson, D. H.; D. Bryant (2006). "Application of Phylogenetic Networks in Evolutionary Studies". Mol. Biol. Evol. 23 (2): 254–267. doi:10.1093/molbev/msj030. PMID 16221896.
  3. ^ Bandelt, H. J.; Dress, A. W. (1992). "Split decomposition: a new and useful approach to phylogenetic analysis of distance data". Molecular Phylogenetics and Evolution. 1 (3): 242–252. Bibcode:1992MolPE...1..242B. doi:10.1016/1055-7903(92)90021-8. ISSN 1055-7903. PMID 1342941.
  4. ^ Holland, Barbara; Moulton, Vincent (2003). "Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees". In Benson, Gary; Page, Roderic D. M. (eds.). Algorithms in Bioinformatics. Lecture Notes in Computer Science. Vol. 2812. Springer Berlin Heidelberg. pp. 165–176. doi:10.1007/978-3-540-39763-2_13. ISBN 9783540397632.
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📚 Artikel Terkait di Wikipedia

Nexus file

phylogenetic programs, including PAUP*, MrBayes, Mesquite, MacClade, and SplitsTree, use this format. Nexus file names typically have the extension .nxs or

Dendroscope

Tübingen in Germany, who also created SplitsTree. List of phylogenetic tree visualization software SplitsTree MEGAN Huson, Daniel H.; Daniel C. Richter;

Phylogenetic network

Phylogenetic networks can be inferred and visualised with software such as SplitsTree, the R-package, phangorn, and, more recently, Dendroscope. A standard

Neighbor-net

the corresponding circular ordering. The method is implemented in the SplitsTree and R/Phangorn packages. Examples of the application of Neighbor-net can

Macedonians (ethnic group)

constructed a graph with the distance-based Neighbor-net method of software SplitsTree for the populations of interest. The resulting network exemplifies genetic

Split (phylogenetics)

compatible if any of the subsets defined by each split do not overlap. SplitsTree, a program for inferring phylogenetic (split) networks. Jörger K. M.,

Newick format

edges are drawn as "transfer" edges. Some programs (e.g. Dendroscope and SplitsTree) allow exactly one copy of the reticulate node to be labeled with ## to

ADMIXTOOLS

ancestry proportions. qpAdm is often used in conjunction with CP/NNLS. SplitsTree Dendroscope List of phylogenetics software Patterson N, Moorjani P, Luo